# PrimerLab Genomic

## Docs

- [Algorithms](https://primerlab-genomic.mintlify.app/docs/concepts/algorithms.md)
- [Architecture](https://primerlab-genomic.mintlify.app/docs/concepts/architecture.md)
- [Amplicon Analysis](https://primerlab-genomic.mintlify.app/docs/concepts/features/amplicon.md): Feature documentation: Amplicon Analysis
- [Auto Parameter Suggestion](https://primerlab-genomic.mintlify.app/docs/concepts/features/auto-suggest.md): Feature documentation: Auto Parameter Suggestion
- [Batch Processing](https://primerlab-genomic.mintlify.app/docs/concepts/features/batch-processing.md): Feature documentation: Batch Processing
- [Multiplex Analysis](https://primerlab-genomic.mintlify.app/docs/concepts/features/compat_check.md): Feature documentation: Multiplex Analysis
- [Genotyping / Allele Discrimination](https://primerlab-genomic.mintlify.app/docs/concepts/features/genotyping.md): Feature documentation: Genotyping / Allele Discrimination
- [Features](https://primerlab-genomic.mintlify.app/docs/concepts/features/index.md): Feature documentation: Features
- [Region Masking](https://primerlab-genomic.mintlify.app/docs/concepts/features/masking.md): Feature documentation: Region Masking
- [SYBR Green Melt Curve Analysis](https://primerlab-genomic.mintlify.app/docs/concepts/features/melt-curve.md): Feature documentation: SYBR Green Melt Curve Analysis
- [Off-target Detection](https://primerlab-genomic.mintlify.app/docs/concepts/features/offtarget-detection.md): Feature documentation: Off-target Detection
- [Probe Binding Simulation](https://primerlab-genomic.mintlify.app/docs/concepts/features/probe-binding.md): Feature documentation: Probe Binding Simulation
- [Report Generation](https://primerlab-genomic.mintlify.app/docs/concepts/features/report-generation.md): Feature documentation: Report Generation
- [RT-qPCR Primer Validation](https://primerlab-genomic.mintlify.app/docs/concepts/features/rtpcr.md): Feature documentation: RT-qPCR Primer Validation
- [Sequence Handling](https://primerlab-genomic.mintlify.app/docs/concepts/features/sequence-handling.md): Feature documentation: Sequence Handling
- [Species Specificity Check](https://primerlab-genomic.mintlify.app/docs/concepts/features/species-specificity.md): Feature documentation: Species Specificity Check
- [Tm Gradient Simulation](https://primerlab-genomic.mintlify.app/docs/concepts/features/tm-gradient.md): Feature documentation: Tm Gradient Simulation
- [Concepts](https://primerlab-genomic.mintlify.app/docs/concepts/index.md)
- [Scoring](https://primerlab-genomic.mintlify.app/docs/concepts/scoring.md)
- [Specificity](https://primerlab-genomic.mintlify.app/docs/concepts/specificity.md)
- [Understanding results](https://primerlab-genomic.mintlify.app/docs/concepts/understanding-results.md)
- [Getting Started](https://primerlab-genomic.mintlify.app/docs/getting-started.md): Install PrimerLab and run your first primer design
- [Batch design](https://primerlab-genomic.mintlify.app/docs/guides/batch-design.md)
- [Customization](https://primerlab-genomic.mintlify.app/docs/guides/customization.md)
- [Guides](https://primerlab-genomic.mintlify.app/docs/guides/index.md)
- [Multiplex](https://primerlab-genomic.mintlify.app/docs/guides/multiplex.md)
- [Nested pcr](https://primerlab-genomic.mintlify.app/docs/guides/nested-pcr.md)
- [Pcr design](https://primerlab-genomic.mintlify.app/docs/guides/pcr-design.md)
- [Qpcr design](https://primerlab-genomic.mintlify.app/docs/guides/qpcr-design.md)
- [Quickstart](https://primerlab-genomic.mintlify.app/docs/guides/quickstart.md)
- [Species specificity](https://primerlab-genomic.mintlify.app/docs/guides/species-specificity.md)
- [PrimerLab Documentation](https://primerlab-genomic.mintlify.app/docs/index.md): Modular bioinformatics framework for automated primer and probe design
- [API Reference](https://primerlab-genomic.mintlify.app/docs/reference/api.md): Python API for programmatic access to PrimerLab
- [API Reference](https://primerlab-genomic.mintlify.app/docs/reference/api/index.md): Python API reference for API Reference
- [In-silico PCR API](https://primerlab-genomic.mintlify.app/docs/reference/api/insilico.md): Python API reference for In-silico PCR API
- [Models Reference](https://primerlab-genomic.mintlify.app/docs/reference/api/models.md): Python API reference for Models Reference
- [Public API](https://primerlab-genomic.mintlify.app/docs/reference/api/public.md): Python API reference for Public API
- [Report API](https://primerlab-genomic.mintlify.app/docs/reference/api/report.md): Python API reference for Report API
- [primerlab amplicon-qc](https://primerlab-genomic.mintlify.app/docs/reference/cli/amplicon-qc.md): CLI reference for the primerlab amplicon-qc command
- [primerlab batch-run](https://primerlab-genomic.mintlify.app/docs/reference/cli/batch-run.md): CLI reference for the primerlab batch-run command
- [BLAST Command](https://primerlab-genomic.mintlify.app/docs/reference/cli/blast.md): CLI reference for the BLAST Command command
- [primerlab compare](https://primerlab-genomic.mintlify.app/docs/reference/cli/compare.md): CLI reference for the primerlab compare command
- [primerlab multiplex](https://primerlab-genomic.mintlify.app/docs/reference/cli/compat_check.md): CLI reference for the primerlab multiplex command
- [primerlab health](https://primerlab-genomic.mintlify.app/docs/reference/cli/health.md): CLI reference for the primerlab health command
- [primerlab history](https://primerlab-genomic.mintlify.app/docs/reference/cli/history.md): CLI reference for the primerlab history command
- [primerlab init](https://primerlab-genomic.mintlify.app/docs/reference/cli/init.md): CLI reference for the primerlab init command
- [primerlab insilico](https://primerlab-genomic.mintlify.app/docs/reference/cli/insilico.md): CLI reference for the primerlab insilico command
- [primerlab melt-curve](https://primerlab-genomic.mintlify.app/docs/reference/cli/melt-curve.md): CLI reference for the primerlab melt-curve command
- [primerlab plot](https://primerlab-genomic.mintlify.app/docs/reference/cli/plot.md): CLI reference for the primerlab plot command
- [primerlab preset](https://primerlab-genomic.mintlify.app/docs/reference/cli/preset.md): CLI reference for the primerlab preset command
- [primerlab probe-check](https://primerlab-genomic.mintlify.app/docs/reference/cli/probe-check.md): CLI reference for the primerlab probe-check command
- [primerlab run](https://primerlab-genomic.mintlify.app/docs/reference/cli/run.md): CLI reference for the primerlab run command
- [primerlab species-check](https://primerlab-genomic.mintlify.app/docs/reference/cli/species-check.md): CLI reference for the primerlab species-check command
- [primerlab stats](https://primerlab-genomic.mintlify.app/docs/reference/cli/stats.md): CLI reference for the primerlab stats command
- [primerlab tm-gradient](https://primerlab-genomic.mintlify.app/docs/reference/cli/tm-gradient.md): CLI reference for the primerlab tm-gradient command
- [primerlab validate](https://primerlab-genomic.mintlify.app/docs/reference/cli/validate.md): CLI reference for the primerlab validate command
- [Configuration Reference](https://primerlab-genomic.mintlify.app/docs/reference/config.md): YAML configuration file reference for PrimerLab
- [Presets Reference](https://primerlab-genomic.mintlify.app/docs/reference/presets.md): Pre-configured parameter sets for common PCR applications
- [Troubleshooting](https://primerlab-genomic.mintlify.app/docs/troubleshooting.md): Solutions for common PrimerLab issues
- [Advanced Configuration](https://primerlab-genomic.mintlify.app/docs/tutorials/advanced-config.md): In-depth guide to PrimerLab configuration options
- [Tutorial: Batch Species-Check](https://primerlab-genomic.mintlify.app/docs/tutorials/batch-species-check.md): Tutorial: Tutorial: Batch Species-Check
- [Case Study: Housekeeping Gene Primers](https://primerlab-genomic.mintlify.app/docs/tutorials/case-study-gapdh.md): Design PCR primers for GAPDH reference gene normalization
- [Multiplex PCR & Dimer Analysis](https://primerlab-genomic.mintlify.app/docs/tutorials/multiplex-dimer.md): Tutorial: Multiplex PCR & Dimer Analysis
- [Nested PCR Design Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/nested-pcr.md): Tutorial: Nested PCR Design Tutorial
- [Off-target Analysis Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/offtarget-tutorial.md): Tutorial: Off-target Analysis Tutorial
- [PCR Walkthrough](https://primerlab-genomic.mintlify.app/docs/tutorials/pcr-walkthrough.md): Tutorial: PCR Walkthrough
- [Advanced qPCR Features Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/qpcr-advanced.md): Tutorial: Advanced qPCR Features Tutorial
- [qPCR Design Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/qpcr-design.md): Tutorial: qPCR Design Tutorial
- [Quick Start Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/quickstart.md): Tutorial: Quick Start Tutorial
- [Species Specificity Check Tutorial](https://primerlab-genomic.mintlify.app/docs/tutorials/species-check.md): Tutorial: Species Specificity Check Tutorial
- [Tutorial: Tm Gradient Simulation](https://primerlab-genomic.mintlify.app/docs/tutorials/tm-gradient.md): Tutorial: Tutorial: Tm Gradient Simulation

## OpenAPI Specs

- [openapi](https://primerlab-genomic.mintlify.app/api-reference/openapi.json)